ProSeries will no transmit the 2553.. You can either have it faxed in or mailed in.
some late elections can be attached to the 1120S, but Generally, send the original election (no photocopies) or fax it to the Internal Revenue Service Center listed below. If the corporation (entity) files this election by fax, keep the original Form 2553 with the corporation's (entity’s) permanent records.
Here is a link to instructions. https://www.irs.gov/instructions/i2553
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