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"can this income be added to S-Corp?"
Has he notified that payer with the info required for the S corp (using W9) and asked them to issue Corrected 1099 for both the personal info and the LLC info? I think you are describing two different EIN were used, which is why they issued two 1099? They can file corrected for those two; there is no need to send a 1099-NEC to the S Corp.
Oh, what about this part: "and will be making late s-corp election"
Until that is accepted, there is no S Corp. And what does "late" mean? Was there payroll in 2020?
No payroll in 2020. S Corp started mid last year and planning on filing late S-Corp relief. You can file 2553 with the tax return and request late relief election. I believe he started the business before creating an LLC therefore a 1099 was issued under his name and SSN for the portion of payments, he most likely did not fill out the W9 for the business as an S-Corp and received another 1099 for the business using the EIN. I wonder if the company that issued the 1099 would be willing to correct it? In that case he didn't need to receive a 1099 at all.
Why is this not a 2021 start, then? What are you going to do about 2020 payroll for this person in the S Corp? That's pretty late, now.
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