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I use lacerte so I may be barking up the wrong tree, but in the interest of helping (and in the interest of barking up the wrong tree) give this a try:
In Lacerte, in the 1040X screen, there is a box where you have to put a 1 to indicate 1040X and another box to indicate 540X (California, my home state). Is there such a box for your software?
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