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You seem to be saying that the federal and CA Schedules L, M-1 and M-2 are the same. What item do you think should be different?
Look in Screen 25. In Other there are some overrides and check boxes that force CA to be the same as federal.
I came hear with the same problem. Schedule M2 Line 3 Net Income per Books is erroneously showing CA taxable income (Sch K Column (d) Line 21a). You can make an adjustment in the CA column in the M2 (screen 28), but the 568 is still in draft form, and I think they will fix it in an update. For now I'm making sure I can reconcile the M2 and holding until the update.