Do you mean your partnership entity was denied an EFIN for failure to be current in your tax filings? Sounds like an issue you need to take up with your tax professional before you try to process your efin application. 

Step 3: Pass a Suitability Check

After you submit your application and submit the required information outlined above, the IRS will conduct a suitability check. This suitability check may involve: a credit check; a tax compliance check; a criminal background check; and a check for prior non-compliance with IRS e-file requirements.