I had transferred my 2018 files back in December, so for anyone with a QBI deduction in 2018, the 2 year comparison for 2018 doesn't show the QBI deduction.  However, the 2018 tax is correct.

I had corrected a few clients, but didn't realize it was a software issue.  Was this updated and I missed it? If so, you will have to re-transfer any 2019 returns with QBI or manually add the deduction to your 2 year comparison.