I usually print out the depreciation details worksheet (for recapture purposes once its sold) and then delete the Sch D

Ive heard other people put all assets to .01% business use and leave the Sch E in place, they both accomplish the same thing.  

EDIT:  I hadnt considered suspended losses, maybe the .01% bus usage and leave the Sch E intact along with the 8582 is a better bet?