I printed out a return on my office computer. showed a balance of $ 3,911 due to client.. all was fine.. I backed up all returns today at end of day.. I came home.. restored all the returns from today.. so far so good.

I downloaded the acknowlegements and that one return showed  a rejection.. After numerous attempts to cure the rejection, decided we would just paper file that (spent way too much time on this return cure). so on the screen and on the 8879, return showed a balance due of $ 3,911 after
I restored it on my home computer.. so I  printed it out for the paper submission and the refund monitor I noticed, and on the printout of the 1040 now shows a balance of $ 244.. i reviewed the printout to the $ 3,911 version and some numbers changed, once printed.. 

I deleted the file.. restored it again. refund montior correctly showed a balance due of $ 3,911.. printed it out.. balance due changed to $ 244

So i compared the two sets of returns in more detail.  wife is self employed.. her Schedule C is in both versions of returns,the 3,911 one and the 244 one but Schedule SE is missing, as well as the self employed tax deduction.  The Schedule C is in both versions but the SE is  now blank on the one wiht a balance due of 244.. the SE is there but all blank. anyone see an issue where printing a return changes the results, while printing?