I previously asked a question about this and received an answer clarifying my understanding of the housing allowance.  The software was not calculating SE Tax.  I have called Proseries support but nothing they provided helped.  I clicked thru the options and it appears option 3 pay self employment on W2 income and housing allowance.  The options apply if no FICA was withheld. Problem is FICA was held so I do not know how to handle this.  Any recommendations on how to handle this?  If I ignore the housing the client gets a 9533 refund.  If I select option 3 he owes 2322.  He already paid 5921. How do I handle this?