I entered the 1099Q and then went to the taxpayers  work sheet for the 1098T and entered everything on it.   Of course it made part of the 1099Q taxable, which is fine and then stated at the bottom of the work sheet that it lowered  the adjusted qualified expenses.  (Am I to go back up and alter the qualified expenses to that lowered amount on the 1098T or leave it alone and the program does the math it self for me?)