Yes.  It is correct if there is really a due for the additional 0.9% Medicare tax needed to be applied to the tax return.

But on the W-2 show a correct amount already which included all "standard & additional tax" Medicare Tax amount. 

Form 8959 show the calculation and but did not reconcile and apply only the difference, if any, to line 25 c.  ..... It went ahead apply the full 0.9% additional tax to Form 1040.  That means we add extra and not necessary amount for the tax due.

Is this a tax program error????