Edit: Wait, you're not asking about the 8949 presentation, your complaint is just that the covered transactions flow to Line 1a, rather than Line 1b, of the Schedule D? Read the Schedule D instructions; that's where they're supposed to go unless there are column (g) adjustments. 

Original response:

Enter a 1 for "basis not reported to IRS" in either of the circled fields, for each transaction.