If that's the case. I suggest not risk to e-file it. Instead, do a physical paper file. Processed with no problem doesn't mean successfully transmitted to and accepted by IRS. If there is an issue, IRS will not listen to this sort of reasons like the software said it is successful. 

I believe the 940/941 you e-filed is still showing pending in EasyACCT. Before this terrible 25/26, 940/941 e-filing normally receives success confirmation within 15 minutes, either by email or showing so in EasyACCT, not just pending.