This article should help: https://proconnect.intuit.com/community/individual/help/proseries-form-1099-r-faq-s/00/4853
How do I indicate the distribution is exempt from the 10% penalty for the 5329?
If any of the distribution was not subject to additional tax:
- Open the 1099-R Worksheet.
- Fill out page 1 with the information from the 1099-R received.
- Open the Form 5329-T if the 1099-R is for the taxpayer or the 5329-S if the 1099-R is for the spouse.
- Scroll to the Distributions Not Subject to Additional Tax Smart Worksheet below line 1.
- On lines A-L enter the amount not subject to additional tax.
A-L have the codes that give the exemption of the 10% penalty.
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