If you are referring to the 2024 Form....

The F 3893 from Lacerte shows on the upper left corner "Form "  1,2, or 3 ".  That number indicates the type of entity.

If the FTB isn't processing that info, I don't see how it is Lacerte/Intuit's fault. 

I haven't seen the issue reported (yet) on Spidell's message board.  And I haven't experienced it yet but I insist my clients pay this on line to avoid giving the FTB any opportunity to muck it up.

I didn't check on the 2023 version.